SNP Profiles matching ICS 39

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_Input profile	GG	TT	AC	GG	CT	AC	CC	AG	CT	AT	GG	AA	CC	CC
1._MARPER_37	-	TT	-	GG	-	-	-	AG	CT	-	GG	AA	CC	CC
2._GU_255_/P	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
3._GC-08-282-8-54	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
4._GU_255_/P	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
5._GU_255_/P	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
6._GU_255_/P	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
7._GU_255_/P	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
8._GC-08-282-8-54	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
9._GC-08-282-8-54	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
10._GC-08-282-8-54	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
11._GC-08-282-8-54	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
12._NA_168	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
13._NA_168	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
14._NA_168	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
15._NA_168	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
16._NA_168	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
17._GC-01-112-6-09	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
18._GC-01-112-6-09	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
19._GC-01-112-6-09	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
20._GC-01-112-6-09	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC
21._GC-01-112-6-09	GG	TT	AC	GG	CT	AA	CC	AG	CT	AT	GG	AG	CC	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	GG	AA	CC	AA	GG	CC	CC	CT	GG	AT	TT	AG	CT
1._MARPER_37	-	GG	-	CC	AA	GG	-	CC	-	GG	AT	TT	AG	-
2._GU_255_/P	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	_
3._GC-08-282-8-54	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	_
4._GU_255_/P	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
5._GU_255_/P	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
6._GU_255_/P	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
7._GU_255_/P	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
8._GC-08-282-8-54	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
9._GC-08-282-8-54	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
10._GC-08-282-8-54	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
11._GC-08-282-8-54	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
12._NA_168	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
13._NA_168	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
14._NA_168	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
15._NA_168	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
16._NA_168	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
17._GC-01-112-6-09	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
18._GC-01-112-6-09	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
19._GC-01-112-6-09	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
20._GC-01-112-6-09	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC
21._GC-01-112-6-09	GT	GG	AA	CC	AA	GG	CC	CT	CT	GG	AT	TT	AG	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AA	CC	CC	TT	TT	AC	TT	TT	CC	AG	CC	X_X	X_X
1._MARPER_37	AG	AA	-	CC	-	TT	AA	-	TT	CC	AA	CC	X_X	X_X
2._GU_255_/P	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
3._GC-08-282-8-54	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
4._GU_255_/P	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
5._GU_255_/P	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
6._GU_255_/P	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
7._GU_255_/P	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
8._GC-08-282-8-54	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
9._GC-08-282-8-54	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
10._GC-08-282-8-54	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
11._GC-08-282-8-54	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
12._NA_168	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
13._NA_168	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
14._NA_168	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
15._NA_168	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
16._NA_168	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
17._GC-01-112-6-09	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
18._GC-01-112-6-09	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
19._GC-01-112-6-09	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
20._GC-01-112-6-09	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X
21._GC-01-112-6-09	GG	AA	CC	CC	TT	TT	AA	TT	TT	CG	AA	CC	X_X	X_X

Input profile: ICS_39 RUQ_1089

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._MARPER_37

96.2 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 661

Dapeng Zhang, 2014

2._GU_255_/P

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8854 1

Dapeng Zhang, 2016

3._GU_255 GC-08-282-8-54

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

4._GU_255_/P

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8854 9

Dapeng Zhang, 2016

5._GU_255_/P

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8854 6

Dapeng Zhang, 2016

6._GU_255_/P

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8854 4

Dapeng Zhang, 2016

7._GU_255_/P

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8854 3

Dapeng Zhang, 2016

8._GU_255 GC-08-282-8-54

90 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._GU_255 GC-08-282-8-54

90 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

10._GU_255 GC-08-282-8-54

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

11._GU_255 GC-08-282-8-54

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

12._NA_168

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 6 > FP

Dapeng Zhang, 2016

13._NA_168

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 4 > FP

Dapeng Zhang, 2016

14._NA_168

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 1 > FP

Dapeng Zhang, 2016

15._NA_168

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 12

Dapeng Zhang, 2016

16._NA_168

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1609 10

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

17._NA_168 GC-01-112-6-09

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

18._NA_168 GC-01-112-6-09

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

19._NA_168 GC-01-112-6-09

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

20._NA_168 GC-01-112-6-09

90 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

21._NA_168 GC-01-112-6-09

90 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520